HL_5KTJ_003

3D structure

PDB id

5KTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Pistol, a class of self-cleaving ribozyme

Experimental method

X-RAY DIFFRACTION

Resolution

2.97 Å

Loop

Sequence

GUUUGAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KTJ_003 not in the Motif Atlas

Geometric match to HL_6UFJ_003

Geometric discrepancy: 0.0995

The information below is about HL_6UFJ_003

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

29

Unit IDs

5KTJ|1|C|G|5
5KTJ|1|C|U|6
5KTJ|1|C|U|7
5KTJ|1|C|U|8
5KTJ|1|C|G|9
5KTJ|1|C|A|10
5KTJ|1|C|G|11
5KTJ|1|C|C|12

Current chains

Chain C

Pistol (50-MER)

Nearby chains

Chain A

Pistol ribozyme

Chain D

RNA (5'-R(*UP*CP*UP*GP*CP*UP*CP*UP*CP*GP*UP*CP*CP*AP*A)-3')