HL_5L4O_001

3D structure

PDB id

5L4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of an E.coli initiator tRNAfMet A1-U72 variant

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CAGCCUGGAG*G

Length

11 nucleotides

Bulged bases

5L4O|1|A|C|16, 5L4O|1|A|G|18, 5L4O|1|A|G|19

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5L4O_001 not in the Motif Atlas

Homologous match to HL_4LCK_001

Geometric discrepancy: 0.2122

The information below is about HL_4LCK_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5L4O|1|A|C|13
5L4O|1|A|A|14
5L4O|1|A|G|15
5L4O|1|A|C|16
5L4O|1|A|C|17
5L4O|1|A|U|17|||A
5L4O|1|A|G|18
5L4O|1|A|G|19
5L4O|1|A|A|21
5L4O|1|A|G|22
*
5L4O|1|A|G|22

Current chains

Chain A

tRNA (76-MER)

Nearby chains