HL_5LI0_028

3D structure

PDB id

5LI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAAACAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LI0_028 not in the Motif Atlas

Homologous match to HL_7RQB_028

Geometric discrepancy: 0.1895

The information below is about HL_7RQB_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

5LI0|1|A|G|1022
5LI0|1|A|A|1023
5LI0|1|A|A|1024
5LI0|1|A|A|1025
5LI0|1|A|C|1026
5LI0|1|A|A|1027
5LI0|1|A|G|1028
5LI0|1|A|C|1029

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L30

Chain T

50S ribosomal protein L20

Chain U

50S ribosomal protein L21