HL_5LI0_029

3D structure

PDB id

5LI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

5LI0|1|A|A|1114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LI0_029 not in the Motif Atlas

Geometric match to HL_1H4S_002

Geometric discrepancy: 0.384

The information below is about HL_1H4S_002

Detailed Annotation

tRNA anticodon loop with synthetase

Broad Annotation

tRNA anticodon loop with synthetase

Motif group

HL_48417.6

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

5LI0|1|A|C|1108
5LI0|1|A|U|1109
5LI0|1|A|U|1110
5LI0|1|A|A|1111
5LI0|1|A|G|1112
5LI0|1|A|A|1113
5LI0|1|A|A|1114
5LI0|1|A|G|1115
5LI0|1|A|C|1116
5LI0|1|A|A|1117
5LI0|1|A|G|1118

Current chains

Chain A

23S ribosomal RNA

Nearby chains