HL_5LI0_042

3D structure

PDB id

5LI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGCAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LI0_042 not in the Motif Atlas

Homologous match to HL_7RQB_044

Geometric discrepancy: 0.2249

The information below is about HL_7RQB_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_76539.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

5LI0|1|A|C|1779
5LI0|1|A|G|1780
5LI0|1|A|C|1781
5LI0|1|A|A|1782
5LI0|1|A|G|1783

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain S

50S ribosomal protein L19