HL_5LI0_052

3D structure

PDB id

5LI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

5LI0|1|A|A|2295, 5LI0|1|A|C|2302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LI0_052 not in the Motif Atlas

Homologous match to HL_4WF9_050

Geometric discrepancy: 0.1422

The information below is about HL_4WF9_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

5LI0|1|A|C|2291
5LI0|1|A|U|2292
5LI0|1|A|A|2293
5LI0|1|A|A|2294
5LI0|1|A|A|2295
5LI0|1|A|A|2296
5LI0|1|A|G|2297
5LI0|1|A|G|2298
5LI0|1|A|U|2299
5LI0|1|A|A|2300
5LI0|1|A|A|2301
5LI0|1|A|C|2302
5LI0|1|A|G|2303

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L16

Chain Z

50S ribosomal protein L27