HL_5LI0_053

3D structure

PDB id

5LI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGUUGGAAAUC

Length

11 nucleotides

Bulged bases

5LI0|1|A|U|2332, 5LI0|1|A|G|2334, 5LI0|1|A|A|2336

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LI0_053 not in the Motif Atlas

Geometric match to HL_7A0S_011

Geometric discrepancy: 0.1456

The information below is about HL_7A0S_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

5LI0|1|A|G|2330
5LI0|1|A|G|2331
5LI0|1|A|U|2332
5LI0|1|A|U|2333
5LI0|1|A|G|2334
5LI0|1|A|G|2335
5LI0|1|A|A|2336
5LI0|1|A|A|2337
5LI0|1|A|A|2338
5LI0|1|A|U|2339
5LI0|1|A|C|2340

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L5