HL_5LI0_058

3D structure

PDB id

5LI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGUUCACAU

Length

9 nucleotides

Bulged bases

5LI0|1|A|U|2500

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LI0_058 not in the Motif Atlas

Homologous match to HL_5J7L_193

Geometric discrepancy: 0.185

The information below is about HL_5J7L_193

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32735.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5LI0|1|A|A|2498
5LI0|1|A|G|2499
5LI0|1|A|U|2500
5LI0|1|A|U|2501
5LI0|1|A|C|2502
5LI0|1|A|A|2503
5LI0|1|A|C|2504
5LI0|1|A|A|2505
5LI0|1|A|U|2506

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 8

50S ribosomal protein L36

Chain P

50S ribosomal protein L16