HL_5LI0_064

3D structure

PDB id

5LI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

5LI0|1|A|G|2778

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LI0_064 not in the Motif Atlas

Homologous match to HL_4WF9_062

Geometric discrepancy: 0.1419

The information below is about HL_4WF9_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

5LI0|1|A|C|2772
5LI0|1|A|U|2773
5LI0|1|A|G|2774
5LI0|1|A|A|2775
5LI0|1|A|A|2776
5LI0|1|A|A|2777
5LI0|1|A|G|2778
5LI0|1|A|C|2779
5LI0|1|A|A|2780
5LI0|1|A|U|2781
5LI0|1|A|C|2782
5LI0|1|A|U|2783
5LI0|1|A|A|2784
5LI0|1|A|A|2785
5LI0|1|A|G|2786

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 8

50S ribosomal protein L36

Chain H

50S ribosomal protein L6

Chain M

50S ribosomal protein L13