3D structure

PDB id
5LI0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome from Staphylococcus aureus
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
AGUAACUGU
Length
9 nucleotides
Bulged bases
5LI0|1|a|C|476
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5LI0_081 not in the Motif Atlas
Homologous match to HL_5J7L_012
Geometric discrepancy: 0.48
The information below is about HL_5J7L_012
Detailed Annotation
GNRA related
Broad Annotation
GNRA related
Motif group
HL_81538.2
Basepair signature
cWW-tSH-F-F-F-F
Number of instances in this motif group
16

Unit IDs

5LI0|1|a|A|471
5LI0|1|a|G|472
5LI0|1|a|U|473
5LI0|1|a|A|474
5LI0|1|a|A|475
5LI0|1|a|C|476
5LI0|1|a|U|477
5LI0|1|a|G|478
5LI0|1|a|U|479

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain p
30S ribosomal protein S16

Coloring options:


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