HL_5LI0_081
3D structure
- PDB id
- 5LI0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome from Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- AGUAACUGU
- Length
- 9 nucleotides
- Bulged bases
- 5LI0|1|a|C|476
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5LI0_081 not in the Motif Atlas
- Homologous match to HL_5J7L_012
- Geometric discrepancy: 0.48
- The information below is about HL_5J7L_012
- Detailed Annotation
- GNRA related
- Broad Annotation
- GNRA related
- Motif group
- HL_81538.2
- Basepair signature
- cWW-tSH-F-F-F-F
- Number of instances in this motif group
- 16
Unit IDs
5LI0|1|a|A|471
5LI0|1|a|G|472
5LI0|1|a|U|473
5LI0|1|a|A|474
5LI0|1|a|A|475
5LI0|1|a|C|476
5LI0|1|a|U|477
5LI0|1|a|G|478
5LI0|1|a|U|479
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain p
- 30S ribosomal protein S16
Coloring options: