HL_5LI0_100

3D structure

PDB id

5LI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUUUA

Length

5 nucleotides

Bulged bases

5LI0|1|a|U|1464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LI0_100 not in the Motif Atlas

Geometric match to HL_4YAZ_004

Geometric discrepancy: 0.2844

The information below is about HL_4YAZ_004

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

5LI0|1|a|U|1461
5LI0|1|a|U|1462
5LI0|1|a|U|1463
5LI0|1|a|U|1464
5LI0|1|a|A|1465

Current chains

Chain a

16S ribosomal RNA

Nearby chains