HL_5LI0_104

3D structure

PDB id

5LI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAGUAAAUG

Length

9 nucleotides

Bulged bases

5LI0|1|A|A|658, 5LI0|1|A|A|660

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LI0_104 not in the Motif Atlas

Homologous match to HL_4WF9_019

Geometric discrepancy: 0.4453

The information below is about HL_4WF9_019

Detailed Annotation

Other HL

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

5LI0|1|A|C|654
5LI0|1|A|A|655
5LI0|1|A|G|656
5LI0|1|A|U|657
5LI0|1|A|A|658
5LI0|1|A|A|659
5LI0|1|A|A|660
5LI0|1|A|U|661
5LI0|1|A|G|662

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L4