HL_5LI0_108

3D structure

PDB id

5LI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGUCUUGCU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LI0_108 not in the Motif Atlas

Geometric match to HL_4JXZ_002

Geometric discrepancy: 0.3542

The information below is about HL_4JXZ_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

T-loop

Motif group

HL_77436.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

5LI0|1|a|G|216
5LI0|1|a|G|217
5LI0|1|a|U|218
5LI0|1|a|C|219
5LI0|1|a|U|220
5LI0|1|a|U|221
5LI0|1|a|G|222
5LI0|1|a|C|223
5LI0|1|a|U|224

Current chains

Chain a

16S ribosomal RNA

Nearby chains