HL_5LL6_017

3D structure

PDB id

5LL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 40S ABCE1 post-splitting complex in ribosome recycling and translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCUAACCUUGAGUCCUUGUGGCUCUUGGCGAACC

Length

34 nucleotides

Bulged bases

5LL6|1|2|U|705, 5LL6|1|2|C|708, 5LL6|1|2|U|718, 5LL6|1|2|U|719, 5LL6|1|2|U|721, 5LL6|1|2|G|732, 5LL6|1|2|A|733

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LL6|1|2|G|703
5LL6|1|2|C|704
5LL6|1|2|U|705
5LL6|1|2|A|706
5LL6|1|2|A|707
5LL6|1|2|C|708
5LL6|1|2|C|709
5LL6|1|2|U|710
5LL6|1|2|U|711
5LL6|1|2|G|712
5LL6|1|2|A|713
5LL6|1|2|G|714
5LL6|1|2|U|715
5LL6|1|2|C|716
5LL6|1|2|C|717
5LL6|1|2|U|718
5LL6|1|2|U|719
5LL6|1|2|G|720
5LL6|1|2|U|721
5LL6|1|2|G|722
5LL6|1|2|G|723
5LL6|1|2|C|724
5LL6|1|2|U|725
5LL6|1|2|C|726
5LL6|1|2|U|727
5LL6|1|2|U|728
5LL6|1|2|G|729
5LL6|1|2|G|730
5LL6|1|2|C|731
5LL6|1|2|G|732
5LL6|1|2|A|733
5LL6|1|2|A|734
5LL6|1|2|C|735
5LL6|1|2|C|736

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S

40S ribosomal protein S4-A

Chain T

40S ribosomal protein S6-A