HL_5LL6_024

3D structure

PDB id

5LL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 40S ABCE1 post-splitting complex in ribosome recycling and translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUUUUUAAUG

Length

10 nucleotides

Bulged bases

5LL6|1|2|U|1059

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LL6_024 not in the Motif Atlas

Homologous match to HL_8P9A_212

Geometric discrepancy: 0.4729

The information below is about HL_8P9A_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91620.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

5LL6|1|2|U|1055
5LL6|1|2|U|1056
5LL6|1|2|U|1057
5LL6|1|2|U|1058
5LL6|1|2|U|1059
5LL6|1|2|U|1060
5LL6|1|2|A|1061
5LL6|1|2|A|1062
5LL6|1|2|U|1063
5LL6|1|2|G|1064

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Q

40S ribosomal protein S1-A

Chain f

40S ribosomal protein S27-A