HL_5LMN_012

3D structure

PDB id

5LMN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF1-IF3-mRNA translation pre-initiation complex (state-1A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

CGACGAG

Length

7 nucleotides

Bulged bases

5LMN|1|A|C|470

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LMN_012 not in the Motif Atlas

Homologous match to HL_4LFB_012

Geometric discrepancy: 0.2177

The information below is about HL_4LFB_012

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

5LMN|1|A|C|458
5LMN|1|A|G|460
5LMN|1|A|A|461
5LMN|1|A|C|470
5LMN|1|A|G|471
5LMN|1|A|A|472
5LMN|1|A|G|473

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S16