HL_5LMP_030
3D structure
- PDB id
- 5LMP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of bacterial 30S-IF1-IF3-mRNA translation pre-initiation complex (state-1C)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.35 Å
Loop
- Sequence
- GAUCAGCCAUGC
- Length
- 12 nucleotides
- Bulged bases
- 5LMP|1|A|C|1363, 5LMP|1|A|U|1364
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5LMP_030 not in the Motif Atlas
- Homologous match to HL_4LFB_030
- Geometric discrepancy: 0.1413
- The information below is about HL_4LFB_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_86432.1
- Basepair signature
- cWW-tWH-tWH-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5LMP|1|A|G|1356
5LMP|1|A|A|1357
5LMP|1|A|U|1358
5LMP|1|A|C|1359
5LMP|1|A|A|1360
5LMP|1|A|G|1361
5LMP|1|A|C|1362
5LMP|1|A|C|1363
5LMP|1|A|A|1363|||A
5LMP|1|A|U|1364
5LMP|1|A|G|1365
5LMP|1|A|C|1366
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain C
- 30S ribosomal protein S3
- Chain I
- 30S ribosomal protein S9
- Chain J
- 30S ribosomal protein S10
- Chain M
- 30S ribosomal protein S13
- Chain N
- 30S ribosomal protein S14 type Z
- Chain V
- 30S ribosomal protein Thx
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