HL_5LMQ_033
3D structure
- PDB id
- 5LMQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex, open form (state-2A)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- CAGCCUGGUAG
- Length
- 11 nucleotides
- Bulged bases
- 5LMQ|1|Z|G|18, 5LMQ|1|Z|G|19, 5LMQ|1|Z|U|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5LMQ_033 not in the Motif Atlas
- Homologous match to HL_1QF6_001
- Geometric discrepancy: 0.1809
- The information below is about HL_1QF6_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20811.4
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 14
Unit IDs
5LMQ|1|Z|C|13
5LMQ|1|Z|A|14
5LMQ|1|Z|G|15
5LMQ|1|Z|C|16
5LMQ|1|Z|C|17
5LMQ|1|Z|U|17|||A
5LMQ|1|Z|G|18
5LMQ|1|Z|G|19
5LMQ|1|Z|U|20
5LMQ|1|Z|A|21
5LMQ|1|Z|G|22
Current chains
- Chain Z
- tRNA
Nearby chains
- Chain X
- Translation initiation factor IF-3
Coloring options: