HL_5LMQ_035

3D structure

PDB id

5LMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex, open form (state-2A)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GG(5MU)(PSU)CAAAUCC

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LMQ_035 not in the Motif Atlas

Homologous match to HL_4WQ1_225

Geometric discrepancy: 0.3258

The information below is about HL_4WQ1_225

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LMQ|1|Z|G|52
5LMQ|1|Z|G|53
5LMQ|1|Z|5MU|54
5LMQ|1|Z|PSU|55
5LMQ|1|Z|C|56
5LMQ|1|Z|A|57
5LMQ|1|Z|A|58
5LMQ|1|Z|A|59
5LMQ|1|Z|U|60
5LMQ|1|Z|C|61
5LMQ|1|Z|C|62

Current chains

Chain Z

tRNA

Nearby chains

Chain X

Translation initiation factor IF-3