HL_5LMR_008

3D structure

PDB id

5LMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex(state-2B)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.45 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LMR_008 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.121

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5LMR|1|A|C|320
5LMR|1|A|A|321
5LMR|1|A|C|322
5LMR|1|A|U|323
5LMR|1|A|G|324
5LMR|1|A|A|325
5LMR|1|A|G|326
5LMR|1|A|A|327
5LMR|1|A|C|328
5LMR|1|A|A|329
5LMR|1|A|C|330
5LMR|1|A|G|331
5LMR|1|A|G|332
5LMR|1|A|G|333

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20