3D structure

PDB id
5LMR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex(state-2B)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.45 Å

Loop

Sequence
CUUCGG
Length
6 nucleotides
Bulged bases
5LMR|1|A|U|421
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5LMR_011 not in the Motif Atlas
Homologous match to HL_4LFB_011
Geometric discrepancy: 0.1596
The information below is about HL_4LFB_011
Detailed Annotation
UNCG
Broad Annotation
No text annotation
Motif group
HL_61337.1
Basepair signature
cWW-tSW-F
Number of instances in this motif group
49

Unit IDs

5LMR|1|A|C|419
5LMR|1|A|U|420
5LMR|1|A|U|421
5LMR|1|A|C|422
5LMR|1|A|G|423
5LMR|1|A|G|424

Current chains

Chain A
16S rRNA

Nearby chains

Chain C
30S ribosomal protein S3
Chain D
30S ribosomal protein S4

Coloring options:


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