3D structure

PDB id
5LMR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex(state-2B)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.45 Å

Loop

Sequence
CGGAAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5LMR_032 not in the Motif Atlas
Homologous match to HL_4LFB_032
Geometric discrepancy: 0.1391
The information below is about HL_4LFB_032
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_34789.1
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
335

Unit IDs

5LMR|1|A|C|1515
5LMR|1|A|G|1516
5LMR|1|A|G|1517
5LMR|1|A|A|1518
5LMR|1|A|A|1519
5LMR|1|A|G|1520

Current chains

Chain A
16S rRNA

Nearby chains

Chain X
Translation initiation factor IF-3

Coloring options:


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