3D structure

PDB id
5LMS (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex(state-2C)
Experimental method
ELECTRON MICROSCOPY
Resolution
5.1 Å

Loop

Sequence
CUAACG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5LMS_019 not in the Motif Atlas
Homologous match to HL_6CZR_090
Geometric discrepancy: 0.1918
The information below is about HL_6CZR_090
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.6
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
360

Unit IDs

5LMS|1|A|C|862
5LMS|1|A|U|863
5LMS|1|A|A|864
5LMS|1|A|A|865
5LMS|1|A|C|866
5LMS|1|A|G|867

Current chains

Chain A
16S rRNA

Nearby chains

Chain E
30S ribosomal protein S5
Chain H
30S ribosomal protein S8

Coloring options:


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