HL_5LMS_035
3D structure
- PDB id
- 5LMS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex(state-2C)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.1 Å
Loop
- Sequence
- G(5MU)(PSU)CAAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5LMS_035 not in the Motif Atlas
- Homologous match to HL_1IL2_003
- Geometric discrepancy: 0.2707
- The information below is about HL_1IL2_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.2
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
5LMS|1|Z|G|53
5LMS|1|Z|5MU|54
5LMS|1|Z|PSU|55
5LMS|1|Z|C|56
5LMS|1|Z|A|57
5LMS|1|Z|A|58
5LMS|1|Z|A|59
5LMS|1|Z|U|60
5LMS|1|Z|C|61
Current chains
- Chain Z
- tRNAi
Nearby chains
- Chain X
- Translation initiation factor IF-3
Coloring options: