HL_5LMU_018

3D structure

PDB id

5LMU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF3-mRNA-tRNA translation pre-initiation complex, closed form (state-4)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUCUC

Length

5 nucleotides

Bulged bases

5LMU|1|A|U|839, 5LMU|1|A|U|841

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LMU_018 not in the Motif Atlas

Homologous match to HL_6CZR_089

Geometric discrepancy: 0.191

The information below is about HL_6CZR_089

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.1

Basepair signature

cWW-F

Number of instances in this motif group

51

Unit IDs

5LMU|1|A|G|838
5LMU|1|A|U|839
5LMU|1|A|C|840
5LMU|1|A|U|841
5LMU|1|A|C|848

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain B

30S ribosomal protein S2