HL_5LQW_005
3D structure
- PDB id
- 5LQW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- yeast activated spliceosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- UGCAUAA
- Length
- 7 nucleotides
- Bulged bases
- 5LQW|1|6|U|74
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5LQW_005 not in the Motif Atlas
- Geometric match to HL_1U9S_002
- Geometric discrepancy: 0.2712
- The information below is about HL_1U9S_002
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_34789.4
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 399
Unit IDs
5LQW|1|6|U|70
5LQW|1|6|G|71
5LQW|1|6|C|72
5LQW|1|6|A|73
5LQW|1|6|U|74
5LQW|1|6|A|75
5LQW|1|6|A|76
Current chains
- Chain 6
- U6 snRNA
Nearby chains
- Chain 5
- U5 spliceosomal RNA; U5 snRNA
- Chain 9
- actin pre-mRNA
- Chain A
- Pre-mRNA-splicing factor 8
- Chain K
- Pre-mRNA-splicing factor PRP46
Coloring options: