HL_5LYB_012

3D structure

PDB id

5LYB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GCCUCGGU

Length

8 nucleotides

Bulged bases

5LYB|1|1|U|545, 5LYB|1|1|C|546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LYB_012 not in the Motif Atlas

Homologous match to HL_8P9A_124

Geometric discrepancy: 0.3317

The information below is about HL_8P9A_124

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LYB|1|1|G|542
5LYB|1|1|C|543
5LYB|1|1|C|544
5LYB|1|1|U|545
5LYB|1|1|C|546
5LYB|1|1|G|547
5LYB|1|1|G|548
5LYB|1|1|U|549

Current chains

Chain 1

25S rRNA

Nearby chains