HL_5LYB_032

3D structure

PDB id

5LYB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

5LYB|1|1|G|1507, 5LYB|1|1|U|1511

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LYB_032 not in the Motif Atlas

Homologous match to HL_5TBW_032

Geometric discrepancy: 0.0616

The information below is about HL_5TBW_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

5LYB|1|1|A|1506
5LYB|1|1|G|1507
5LYB|1|1|C|1508
5LYB|1|1|A|1509
5LYB|1|1|G|1510
5LYB|1|1|U|1511
5LYB|1|1|U|1512

Current chains

Chain 1

25S rRNA

Nearby chains

Chain M7

60S ribosomal protein L17-A

Chain M9

60S ribosomal protein L19-A

Chain O9

60S ribosomal protein L39