HL_5LYB_086

3D structure

PDB id

5LYB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

AAUGUAAAUACCU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LYB_086 not in the Motif Atlas

Homologous match to HL_4V88_199

Geometric discrepancy: 0.0867

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

5LYB|1|2|A|520
5LYB|1|2|A|521
5LYB|1|2|U|522
5LYB|1|2|G|523
5LYB|1|2|U|524
5LYB|1|2|A|525
5LYB|1|2|A|526
5LYB|1|2|A|527
5LYB|1|2|U|528
5LYB|1|2|A|529
5LYB|1|2|C|530
5LYB|1|2|C|531
5LYB|1|2|U|532

Current chains

Chain 2

18S rRNA

Nearby chains

Chain D4

40S ribosomal protein S24-A

Chain S4

40S ribosomal protein S4-A

Chain S9

40S ribosomal protein S9-A