HL_5LYB_088

3D structure

PDB id

5LYB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GCUAACCUUGAGUCCUUGUGGCUCUUGGCGAAC

Length

33 nucleotides

Bulged bases

5LYB|1|2|U|718, 5LYB|1|2|U|719, 5LYB|1|2|U|721

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LYB|1|2|G|703
5LYB|1|2|C|704
5LYB|1|2|U|705
5LYB|1|2|A|706
5LYB|1|2|A|707
5LYB|1|2|C|708
5LYB|1|2|C|709
5LYB|1|2|U|710
5LYB|1|2|U|711
5LYB|1|2|G|712
5LYB|1|2|A|713
5LYB|1|2|G|714
5LYB|1|2|U|715
5LYB|1|2|C|716
5LYB|1|2|C|717
5LYB|1|2|U|718
5LYB|1|2|U|719
5LYB|1|2|G|720
5LYB|1|2|U|721
5LYB|1|2|G|722
5LYB|1|2|G|723
5LYB|1|2|C|724
5LYB|1|2|U|725
5LYB|1|2|C|726
5LYB|1|2|U|727
5LYB|1|2|U|728
5LYB|1|2|G|729
5LYB|1|2|G|730
5LYB|1|2|C|731
5LYB|1|2|G|732
5LYB|1|2|A|733
5LYB|1|2|A|734
5LYB|1|2|C|735

Current chains

Chain 2

18S rRNA

Nearby chains

Chain S4

40S ribosomal protein S4-A