HL_5LYB_142
3D structure
- PDB id
- 5LYB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.25 Å
Loop
- Sequence
- UUGAUAUGAUG
- Length
- 11 nucleotides
- Bulged bases
- 5LYB|1|5|A|1352, 5LYB|1|5|U|1353, 5LYB|1|5|G|1354, 5LYB|1|5|U|1356
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5LYB_142 not in the Motif Atlas
- Geometric match to HL_4OOG_001
- Geometric discrepancy: 0.3686
- The information below is about HL_4OOG_001
- Detailed Annotation
- Mini UNCG
- Broad Annotation
- No text annotation
- Motif group
- HL_12626.2
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 17
Unit IDs
5LYB|1|5|U|1347
5LYB|1|5|U|1348
5LYB|1|5|G|1349
5LYB|1|5|A|1350
5LYB|1|5|U|1351
5LYB|1|5|A|1352
5LYB|1|5|U|1353
5LYB|1|5|G|1354
5LYB|1|5|A|1355
5LYB|1|5|U|1356
5LYB|1|5|G|1357
Current chains
- Chain 5
- 25S rRNA
Nearby chains
- Chain l4
- 60S ribosomal protein L4-A
- Chain l6
- 60S ribosomal protein L6-A
- Chain m8
- 60S ribosomal protein L18-A
- Chain o2
- 60S ribosomal protein L32
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