HL_5LYB_170

3D structure

PDB id

5LYB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

AACAGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LYB_170 not in the Motif Atlas

Homologous match to HL_5TBW_056

Geometric discrepancy: 0.1473

The information below is about HL_5TBW_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

5LYB|1|5|A|2673
5LYB|1|5|A|2674
5LYB|1|5|C|2675
5LYB|1|5|A|2676
5LYB|1|5|G|2677
5LYB|1|5|A|2678
5LYB|1|5|A|2679
5LYB|1|5|A|2680
5LYB|1|5|U|2681

Current chains

Chain 5

25S rRNA

Nearby chains

Chain m1

60S ribosomal protein L11-B

Chain sM

Suppressor protein STM1,Suppressor protein STM1,Ribosome-bound protein Stm1