HL_5LYB_186
3D structure
- PDB id
- 5LYB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.25 Å
Loop
- Sequence
- GUUGAUCCUGC
- Length
- 11 nucleotides
- Bulged bases
- 5LYB|1|6|U|9
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5LYB_186 not in the Motif Atlas
- Homologous match to HL_8C3A_192
- Geometric discrepancy: 0.0949
- The information below is about HL_8C3A_192
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_89881.3
- Basepair signature
- cWW-tHW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5LYB|1|6|G|7
5LYB|1|6|U|8
5LYB|1|6|U|9
5LYB|1|6|G|10
5LYB|1|6|A|11
5LYB|1|6|U|12
5LYB|1|6|C|13
5LYB|1|6|C|14
5LYB|1|6|U|15
5LYB|1|6|G|16
5LYB|1|6|C|17
Current chains
- Chain 6
- 18S rRNA
Nearby chains
- Chain d3
- 40S ribosomal protein S23-A
- Chain s2
- 40S ribosomal protein S2
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