HL_5LYB_201

3D structure

PDB id

5LYB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GUCCGAUUUUUUCGUAC

Length

17 nucleotides

Bulged bases

5LYB|1|6|G|660

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LYB|1|6|G|656
5LYB|1|6|U|657
5LYB|1|6|C|658
5LYB|1|6|C|659
5LYB|1|6|G|660
5LYB|1|6|A|661
5LYB|1|6|U|662
5LYB|1|6|U|663
5LYB|1|6|U|664
5LYB|1|6|U|665
5LYB|1|6|U|666
5LYB|1|6|U|667
5LYB|1|6|C|668
5LYB|1|6|G|669
5LYB|1|6|U|670
5LYB|1|6|A|673
5LYB|1|6|C|674

Current chains

Chain 6

18S rRNA

Nearby chains

Chain d1

40S ribosomal protein S21-A

Chain s2

40S ribosomal protein S2

Chain s9

40S ribosomal protein S9-A