HL_5LYB_231

3D structure

PDB id

5LYB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GCGUAUUGC

Length

9 nucleotides

Bulged bases

5LYB|1|2|U|779, 5LYB|1|2|U|781, 5LYB|1|2|U|782

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LYB_231 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3262

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27483.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

5LYB|1|2|G|776
5LYB|1|2|C|777
5LYB|1|2|G|778
5LYB|1|2|U|779
5LYB|1|2|A|780
5LYB|1|2|U|781
5LYB|1|2|U|782
5LYB|1|2|G|783
5LYB|1|2|C|784

Current chains

Chain 2

18S rRNA

Nearby chains

Chain D4

40S ribosomal protein S24-A

Chain S4

40S ribosomal protein S4-A