HL_5LYB_237

3D structure

PDB id

5LYB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CAGGGCCCAUUCGGGUCUUG

Length

20 nucleotides

Bulged bases

5LYB|1|6|C|489, 5LYB|1|6|U|493, 5LYB|1|6|U|494, 5LYB|1|6|C|495

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LYB|1|6|C|484
5LYB|1|6|A|485
5LYB|1|6|G|486
5LYB|1|6|G|487
5LYB|1|6|G|488
5LYB|1|6|C|489
5LYB|1|6|C|490
5LYB|1|6|C|491
5LYB|1|6|A|492
5LYB|1|6|U|493
5LYB|1|6|U|494
5LYB|1|6|C|495
5LYB|1|6|G|496
5LYB|1|6|G|497
5LYB|1|6|G|498
5LYB|1|6|U|499
5LYB|1|6|C|500
5LYB|1|6|U|501
5LYB|1|6|U|502
5LYB|1|6|G|503

Current chains

Chain 6

18S rRNA

Nearby chains

Chain e0

40S ribosomal protein S30-A

Chain s9

40S ribosomal protein S9-A