HL_5LYB_240
3D structure
- PDB id
- 5LYB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.25 Å
Loop
- Sequence
- UUCCCGUCCGAUCA
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5LYB_240 not in the Motif Atlas
- Homologous match to HL_8P9A_183
- Geometric discrepancy: 0.08
- The information below is about HL_8P9A_183
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_13971.1
- Basepair signature
- cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
5LYB|1|7|U|32
5LYB|1|7|U|33
5LYB|1|7|C|34
5LYB|1|7|C|35
5LYB|1|7|C|36
5LYB|1|7|G|37
5LYB|1|7|U|38
5LYB|1|7|C|39
5LYB|1|7|C|40
5LYB|1|7|G|41
5LYB|1|7|A|42
5LYB|1|7|U|43
5LYB|1|7|C|44
5LYB|1|7|A|45
Current chains
- Chain 7
- 5S rRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain l5
- 60S ribosomal protein L5
- Chain m1
- 60S ribosomal protein L11-B
- Chain sM
- Suppressor protein STM1,Suppressor protein STM1,Ribosome-bound protein Stm1
Coloring options: