HL_5LYV_002

3D structure

PDB id

5LYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of 7SK 5'-hairpin - Osmium derivative

Experimental method

X-RAY DIFFRACTION

Resolution

2.35 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

5LYV|1|B|U|48|||B

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LYV_002 not in the Motif Atlas

Homologous match to HL_5LYS_002

Geometric discrepancy: 0.0758

The information below is about HL_5LYS_002

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

62

Unit IDs

5LYV|1|B|C|48
5LYV|1|B|U|48|||A
5LYV|1|B|U|48|||B
5LYV|1|B|C|48|||C
5LYV|1|B|G|48|||D
5LYV|1|B|G|60

Current chains

Chain B

7SK RNA

Nearby chains