HL_5LZA_024

3D structure

PDB id

5LZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with SECIS-mRNA and P-site tRNA (Initial complex, IC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUCACGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZA_024 not in the Motif Atlas

Geometric match to HL_8G9Z_001

Geometric discrepancy: 0.2445

The information below is about HL_8G9Z_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

5LZA|1|A|G|883
5LZA|1|A|U|884
5LZA|1|A|C|885
5LZA|1|A|A|886
5LZA|1|A|C|890
5LZA|1|A|G|891
5LZA|1|A|A|892
5LZA|1|A|C|893

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain m

30S ribosomal protein S13