HL_5LZA_066

3D structure

PDB id

5LZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with SECIS-mRNA and P-site tRNA (Initial complex, IC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

5LZA|1|A|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZA_066 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.0668

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

5LZA|1|A|G|2819
5LZA|1|A|A|2820
5LZA|1|A|A|2821
5LZA|1|A|G|2822
5LZA|1|A|A|2823
5LZA|1|A|C|2824
5LZA|1|A|G|2825
5LZA|1|A|A|2826
5LZA|1|A|C|2827

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain N

50S ribosomal protein L17