HL_5LZA_081

3D structure

PDB id

5LZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with SECIS-mRNA and P-site tRNA (Initial complex, IC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

5LZA|1|a|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZA_081 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.2518

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5LZA|1|a|G|462
5LZA|1|a|U|463
5LZA|1|a|U|464
5LZA|1|a|A|465
5LZA|1|a|A|466
5LZA|1|a|U|467
5LZA|1|a|A|468
5LZA|1|a|C|469
5LZA|1|a|C|470

Current chains

Chain a

16S ribosomal RNA

Nearby chains