HL_5LZA_102

3D structure

PDB id

5LZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with SECIS-mRNA and P-site tRNA (Initial complex, IC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAGCCUGG(H2U)AG

Length

11 nucleotides

Bulged bases

5LZA|1|v|C|16, 5LZA|1|v|C|17, 5LZA|1|v|U|17|||A, 5LZA|1|v|G|18, 5LZA|1|v|G|19

QA status

Modified nucleotides: H2U

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZA_102 not in the Motif Atlas

Homologous match to HL_1QF6_001

Geometric discrepancy: 0.0954

The information below is about HL_1QF6_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

5LZA|1|v|C|13
5LZA|1|v|A|14
5LZA|1|v|G|15
5LZA|1|v|C|16
5LZA|1|v|C|17
5LZA|1|v|U|17|||A
5LZA|1|v|G|18
5LZA|1|v|G|19
5LZA|1|v|H2U|20
5LZA|1|v|A|21
5LZA|1|v|G|22

Current chains

Chain v

fMet-tRNAfMet

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain F

50S ribosomal protein L5