HL_5LZC_077

3D structure

PDB id

5LZC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the codon reading state (CR)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZC_077 not in the Motif Atlas

Homologous match to HL_6CZR_079

Geometric discrepancy: 0.1977

The information below is about HL_6CZR_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.2

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5LZC|1|a|A|320
5LZC|1|a|A|321
5LZC|1|a|C|322
5LZC|1|a|U|323
5LZC|1|a|G|324
5LZC|1|a|A|325
5LZC|1|a|G|326
5LZC|1|a|A|327
5LZC|1|a|C|328
5LZC|1|a|A|329
5LZC|1|a|C|330
5LZC|1|a|G|331
5LZC|1|a|G|332
5LZC|1|a|U|333

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20