3D structure

PDB id
5LZC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the codon reading state (CR)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.8 Å

Loop

Sequence
GUUAAUACC
Length
9 nucleotides
Bulged bases
5LZC|1|a|U|467
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5LZC_081 not in the Motif Atlas
Homologous match to HL_5J7L_012
Geometric discrepancy: 0.2798
The information below is about HL_5J7L_012
Detailed Annotation
GNRA wlth extra near cWW
Broad Annotation
GNRA wlth extra near cWW
Motif group
HL_81538.2
Basepair signature
cWW-tSH-F-F-F-F
Number of instances in this motif group
16

Unit IDs

5LZC|1|a|G|462
5LZC|1|a|U|463
5LZC|1|a|U|464
5LZC|1|a|A|465
5LZC|1|a|A|466
5LZC|1|a|U|467
5LZC|1|a|A|468
5LZC|1|a|C|469
5LZC|1|a|C|470

Current chains

Chain a
16S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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