HL_5LZC_098

3D structure

PDB id

5LZC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the codon reading state (CR)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

CUGCAACUCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZC_098 not in the Motif Atlas

Homologous match to HL_4LFB_029

Geometric discrepancy: 0.144

The information below is about HL_4LFB_029

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_02887.3

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5LZC|1|a|C|1314
5LZC|1|a|U|1315
5LZC|1|a|G|1316
5LZC|1|a|C|1317
5LZC|1|a|A|1318
5LZC|1|a|A|1319
5LZC|1|a|C|1320
5LZC|1|a|U|1321
5LZC|1|a|C|1322
5LZC|1|a|G|1323

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain m

30S ribosomal protein S13

Chain n

30S ribosomal protein S14

Chain s

30S ribosomal protein S19