3D structure

PDB id
5LZC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the codon reading state (CR)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.8 Å

Loop

Sequence
CUGCAACUCG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5LZC_098 not in the Motif Atlas
Homologous match to HL_4LFB_029
Geometric discrepancy: 0.144
The information below is about HL_4LFB_029
Detailed Annotation
T-loop with 3 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_02887.3
Basepair signature
cWW-tWH-F-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

5LZC|1|a|C|1314
5LZC|1|a|U|1315
5LZC|1|a|G|1316
5LZC|1|a|C|1317
5LZC|1|a|A|1318
5LZC|1|a|A|1319
5LZC|1|a|C|1320
5LZC|1|a|U|1321
5LZC|1|a|C|1322
5LZC|1|a|G|1323

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain m
30S ribosomal protein S13
Chain n
30S ribosomal protein S14
Chain s
30S ribosomal protein S19

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