3D structure

PDB id
5LZD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
GUG(6MZ)AGAUGC
Length
10 nucleotides
Bulged bases
5LZD|1|A|A|2031, 5LZD|1|A|G|2032
QA status
Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5LZD_048 not in the Motif Atlas
Homologous match to HL_5J7L_183
Geometric discrepancy: 0.1195
The information below is about HL_5J7L_183
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_61996.2
Basepair signature
cWW-tWH-F-F-F
Number of instances in this motif group
8

Unit IDs

5LZD|1|A|G|2027
5LZD|1|A|U|2028
5LZD|1|A|G|2029
5LZD|1|A|6MZ|2030
5LZD|1|A|A|2031
5LZD|1|A|G|2032
5LZD|1|A|A|2033
5LZD|1|A|U|2034
5LZD|1|A|G|2035
5LZD|1|A|C|2036

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 0
50S ribosomal protein L32
Chain D
50S ribosomal protein L3

Coloring options:


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