HL_5LZD_049

3D structure

PDB id

5LZD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

ACGCCAGU

Length

8 nucleotides

Bulged bases

5LZD|1|A|C|2145

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZD_049 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.2985

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27483.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

5LZD|1|A|A|2142
5LZD|1|A|C|2143
5LZD|1|A|G|2144
5LZD|1|A|C|2145
5LZD|1|A|C|2146
5LZD|1|A|A|2147
5LZD|1|A|G|2148
5LZD|1|A|U|2149

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain k

30S ribosomal protein S11