HL_5LZD_058
3D structure
- PDB id
- 5LZD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- AGUUCAUAU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5LZD_058 not in the Motif Atlas
- Homologous match to HL_5J7L_193
- Geometric discrepancy: 0.1576
- The information below is about HL_5J7L_193
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_32735.2
- Basepair signature
- cWW-tSH-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
5LZD|1|A|A|2471
5LZD|1|A|G|2472
5LZD|1|A|U|2473
5LZD|1|A|U|2474
5LZD|1|A|C|2475
5LZD|1|A|A|2476
5LZD|1|A|U|2477
5LZD|1|A|A|2478
5LZD|1|A|U|2479
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 4
- 50S ribosomal protein L36
- Chain G
- 50S ribosomal protein L6
- Chain y
- Selenocysteine transfer RNA
Coloring options: