HL_5LZD_062

3D structure

PDB id

5LZD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZD_062 not in the Motif Atlas

Geometric match to HL_7RQB_064

Geometric discrepancy: 0.0832

The information below is about HL_7RQB_064

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

5LZD|1|A|C|2658
5LZD|1|A|G|2659
5LZD|1|A|A|2660
5LZD|1|A|G|2661
5LZD|1|A|A|2662
5LZD|1|A|G|2663

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L6

Chain y

Selenocysteine transfer RNA

Chain z

Selenocysteine-specific elongation factor