HL_5LZD_105

3D structure

PDB id

5LZD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGUC

Length

4 nucleotides

Bulged bases

5LZD|1|x|G|126

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZD_105 not in the Motif Atlas

Geometric match to HL_8K2Z_002

Geometric discrepancy: 0.3017

The information below is about HL_8K2Z_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_04852.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

5LZD|1|x|G|125
5LZD|1|x|G|126
5LZD|1|x|U|127
5LZD|1|x|C|128

Current chains

Chain x

SECIS mRNA

Nearby chains

Chain z

Selenocysteine-specific elongation factor